Bioconductor EPIC microarray

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champ epic microarray normalization minfi

6.8 years ago Laura • 0

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minfi epic microarray bioconductor

updated 2.6 years ago by Lucy • 0 • written 6.9 years ago by c.sae-lee2 • 0

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2.3k

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bioconductor methylation epic microarray champ

7.1 years ago csappleby-mallinder1 • 0

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2.0k

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methylation epic microarray minfi methylationepic

8.0 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.0 years ago chelsey.ju • 0

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1.7k

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rnbeads methylation illumina epic microarray

8.5 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by Biologist ▴ 120

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1.8k

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minfi methylation EPIC microarray illumina

updated 8.8 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.8 years ago by rasii • 0

8 results • Page 1 of 1

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Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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